VISDB Viral Integration Site DataBase

VIS ID

TVIS30003575

Fusion event

HIV-CDV3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q22.1

Reference genome

Start

End

133300213/133581369 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-29c-3p ; hsa-mir-124-3p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-92a-3p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-330-3p ; hsa-mir-498 ; hsa-mir-589-3p ; hsa-mir-548p ; hsa-mir-3133 ; hsa-mir-3142 ; hsa-mir-3613-3p ; hsa-mir-1245b-5p ; hsa-mir-5700 ; hsa-mir-6768-3p ; hsa-mir-329-5p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-mir-196a-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-196b-5p ; hsa-mir-545-3p ; hsa-mir-3200-5p ; hsa-mir-3944-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4649-3p ; hsa-mir-4762-5p ; hsa-mir-7162-3p ; hsa-mir-29b-2-5p ; hsa-mir-129-5p ; hsa-mir-3149 ; hsa-mir-3678-3p ; hsa-mir-4517 ; hsa-mir-2467-3p ; hsa-mir-1909-5p ; hsa-mir-202-3p ; hsa-mir-107 ; hsa-mir-6516-5p ; hsa-mir-1273h-3p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-155-5p ; hsa-mir-298 ; hsa-mir-205-3p ; hsa-mir-5197-3p

Nearest miRNA

hsa-let-7g/Upstream/1595438; hsa-mir-1224/Downstream/786435;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/6771, chr3-CpG: 52/Downstream/80245

Upstream sequence

cttacttgggaggctgaggtgggagtatctcttgagccctggagttgaagattgcagtgagctaagattgggcctctgtactccagcctgggtgacagag

Downstream sequence

caagaccctgtctctaaaaattaatttttaaaaataaaaaatgattttttatGTAGGTTATAAAAATAATATGCTTGTTTTTAGAAATTTTTTTGAGAAA