Basic Information
VIS ID
TVIS30003583
Fusion event
HIV-RASA2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q23
Reference genome
GRCh37/hg19
Start
141322108/141603266 (Hg38)
End
141322108/141603266 (Hg38)
Orient
-
Location type
Intronic
Target gene
RASA2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-182-5p ; hsa-mir-203a-3p ; hsa-mir-4470 ; hsa-mir-3973 ; hsa-mir-4635 ; hsa-mir-548l
Nearest miRNA
hsa-let-7g/Upstream/7165360; hsa-mir-1224/Downstream/9962610;
Nearest TSS
ENST00000440867/Upstream/16567; ENST00000498828/Downstream/134938;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/115348, chr3-CpG: 56/Downstream/56610
Upstream sequence
TTTCTTAACACTATTATCAAAAATACAGTCATGGTAACATTGTTTTAGCTGTGTCCCTTGGGGCCAATATGTAGTTGGACATTCATTTTTATTGTGGTGG
Downstream sequence
TAATTGTATTtttttaaatttaggccaggcacagtggttcaggcccgtaatcccactactttaggaggccaaggcgggtggatcacctgaggtcaggagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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