Basic Information
VIS ID
TVIS30003587
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
150116418/150398631 (Hg38)
End
150116418/150398631 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/15960725; hsa-mir-1224/Downstream/1167245;
Nearest TSS
ENST00000440867/Upstream/111258; ENST00000492828/Downstream/9704;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/217113, chr3-CpG: 241/Downstream/9554
Nearby gene
TSC22D2(No orient, 9704)
Upstream sequence
ctgagaatataagaatgaacaagacagatgaaaaccctctccctcttggaataatccacttcagtatgggaagagagacaacaaacaaaataagtaaata
Downstream sequence
atgtagtatattagaaggttataagtgtgctagagaaaaatcaagcaaaaagagggatgggaggtggaggcttgctgttttaaatagtgtagtcagggaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate