VISDB Viral Integration Site DataBase

VIS ID

TVIS30003588

Fusion event

HIV-MBNL1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q25.1

Reference genome

Start

End

152002260/152284471 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-130b-3p ; hsa-mir-124-3p ; hsa-mir-21-5p ; hsa-mir-19b-3p ; hsa-mir-92b-3p ; hsa-mir-221-3p ; hsa-mir-92a-3p ; hsa-mir-17-5p ; hsa-mir-513a-3p ; hsa-mir-576-5p ; hsa-mir-590-3p ; hsa-mir-936 ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-491-3p ; hsa-mir-590-5p ; hsa-mir-1301-3p ; hsa-mir-4660 ; hsa-mir-5047 ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-let-7f-2-3p ; hsa-mir-19a-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-548aw ; hsa-mir-153-5p ; hsa-mir-552-5p ; hsa-mir-3161 ; hsa-mir-138-2-3p ; hsa-mir-335-5p ; hsa-mir-335-3p ; hsa-mir-629-3p ; hsa-mir-4713-5p ; hsa-mir-4714-3p ; hsa-mir-4775 ; hsa-mir-6867-3p ; hsa-mir-101-3p ; hsa-mir-203a-3p ; hsa-mir-4694-3p ; hsa-mir-218-5p ; hsa-mir-144-3p ; hsa-mir-219a-5p ; hsa-mir-508-3p ; hsa-mir-4445-5p ; hsa-mir-4782-3p ; hsa-mir-6766-3p ; hsa-mir-4482-3p ; hsa-mir-628-5p ; hsa-mir-8075 ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520d-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-520a-3p ; hsa-mir-302a-3p ; hsa-mir-8064 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4693-5p ; hsa-mir-4711-3p ; hsa-mir-4330 ; hsa-mir-6832-3p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-5680 ; hsa-mir-892a ; hsa-mir-4318 ; hsa-mir-5197-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-3591-5p ; hsa-mir-374b-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3124-3p ; hsa-mir-877-3p ; hsa-mir-6760-3p ; hsa-mir-889-5p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-5583-3p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-580-3p ; hsa-mir-433-3p ; hsa-mir-7154-5p ; hsa-mir-500a-5p ; hsa-mir-10b-5p

Nearest miRNA

hsa-let-7g/Upstream/718476; hsa-mir-1224/Downstream/6998175;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/14935, chr3-CpG: 120/Downstream/550342

Upstream sequence

AAGTCAGCTTAATATTTGTGATTTCTCTGTGCCAAAAAGTAACCAATATTAATAGAGAACAGCTTTAGTACATGTAAAAGAAAAAAATCCTTTATGTCAT

Downstream sequence

TTCAAACCCTCAGTGCTTTCTTTCTGACAGATTTTTAATGGTTTTATCAGCTGTTAAttaggttggtgcaaaagtaattgcagttttaaaaaaagatcgc