Basic Information
VIS ID
TVIS30003590
Fusion event
HIV-TMEM14EP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
152057741/152339952 (Hg38)
End
152057741/152339952 (Hg38)
Orient
-
Location type
ncRNA_exonic
Fragile sites / regions
FRA3D
Target gene
TMEM14EP
miRNAs that regulate target gene
hsa-mir-30c-5p
Nearest miRNA
hsa-let-7g/Upstream/773957; hsa-mir-1224/Downstream/6942694;
Nearest TSS
ENST00000440867/Upstream/39754; ENST00000460166/Downstream/75106;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/70416, chr3-CpG: 120/Downstream/494861
Upstream sequence
AGAGTAGCTCTGTGCTGTAAGATGAGCAAAAGAACAGATACCCTAAATCTCAAAGAGCTTTTTCTTTCGTGTTTTTCTTCTGAGTAGGGCATGAGGTTTC
Downstream sequence
AGATTCCCCAGTGTTGACATCTATTATTTTCTACCTTGAGATTTTACCTATAGACACAGAAAGAGGAGATAAAAAggccaggcatggttgctcatccctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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