Basic Information
VIS ID
TVIS30003591
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.32
Reference genome
GRCh37/hg19
Start
158556379/158838590 (Hg38)
End
158556379/158838590 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/7272595; hsa-mir-1224/Downstream/444056;
Nearest TSS
ENST00000440867/Upstream/15396; ENST00000481796/Downstream/123645;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/36050, chr3-CpG: 166/Downstream/924567
Nearby gene
MFSD1(No orient, 8871)
Upstream sequence
CCCCTGGTTTTCTTATCCCCTTTTATAGGTGAGTTTTCTCTAATCACAAAGGAAGTGATGAATATCGTCTTGCCTCAGGTTCCACAGTGGATTCCTAGTT
Downstream sequence
CTACTTACAATGGGGTCCTTTTCCTGAAGGGAATAGCCTAGTTTGATCCTAGTCTCTTGAGATAATTGTCCCTGAAAACCCAGGATATGATGTCAACTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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