VISDB Viral Integration Site DataBase

VIS ID

TVIS30003592

Fusion event

HIV-PDCD10 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q26.1

Reference genome

Start

End

167404253/167686465 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-30b-5p ; hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-let-7b-5p ; hsa-mir-4776-3p ; hsa-mir-1277-5p ; hsa-mir-4652-3p ; hsa-mir-5007-3p ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-6853-3p ; hsa-mir-1206 ; hsa-mir-26b-3p ; hsa-mir-5011-5p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-498 ; hsa-mir-302c-5p ; hsa-mir-2053 ; hsa-mir-4715-3p ; hsa-mir-3064-3p ; hsa-mir-5585-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-203a-3p ; hsa-mir-153-5p ; hsa-mir-5697 ; hsa-mir-4495 ; hsa-mir-586 ; hsa-mir-5680 ; hsa-mir-5683 ; hsa-mir-33a-3p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-7844-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-6740-3p ; hsa-mir-3182 ; hsa-mir-425-5p ; hsa-mir-103a-2-5p ; hsa-mir-200c-3p ; hsa-mir-181b-5p

Nearest miRNA

hsa-let-7g/Upstream/3514909; hsa-mir-1224/Downstream/865389;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/306055, chr3-CpG: 37/Downstream/48123

Upstream sequence

GCCTCTTTCCAGGAGagtgggtcaaaacccttacagcactttaaaaacatctggggcacttttacaaaatatctaaaccctgactccactcccagccaac

Downstream sequence

tgaatcagaatctctgcaggtggggcctaggcagtgggaattttttaaaaactgtcctcaagtgactctaatgcacagaaaggattgacaactattgCTT