Basic Information
VIS ID
TVIS30003593
Fusion event
HIV-TNIK integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
171037784/171319995 (Hg38)
End
171037784/171319995 (Hg38)
Orient
-
Location type
Intronic
Target gene
TNIK
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7g/Upstream/213236; hsa-mir-1224/Downstream/4049545;
Nearest TSS
ENST00000440867/Upstream/94284; ENST00000467896/Downstream/140068;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/291492, chr3-CpG: 89/Downstream/140045
Upstream sequence
TCCTTACAGGAAGGGTCAGTCTCTAAACACTGAAATTTAGAGCATCAGCCCTCACCCAATCTTGGAGGTTAGCTAAAAGCATCTTGAAGGATGACCCCGA
Downstream sequence
AAGCGTAGGAGAGGAGAGTTTAATCTGTGGCTATTCAATATGCACCTGACTGCTCATGCCTGCAAAATAACCCATTTCTGGAGAAAGTTGTATAGCCTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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