Basic Information
VIS ID
TVIS30003598
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.32
Reference genome
GRCh37/hg19
Start
177061775/177343987 (Hg38)
End
177061775/177343987 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/828836; hsa-mir-1224/Downstream/6542813;
Nearest TSS
ENST00000440867/Upstream/49545; ENST00000423466/Downstream/5179;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/145921, chr3-CpG: 63/Downstream/1727530
Nearby gene
LINC00501(No orient, 20552)
Upstream sequence
GTTATTTGTGTCGGAAAGGATTTTATCATAAGCACATTTCTTCTCTCAGTATCACATGATGCGCCATTGAATTTCCCATCATACAAACTTTCTAATCTCA
Downstream sequence
TTTACAGTCACAGAGGTTGAAAATAGATAACTAATCAGCATTTAAGTACCTTATAATCTGTAAGGTAAACCAGATATGGCTAGACTGGCAGTGGAACATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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