Basic Information
VIS ID
TVIS30003612
Fusion event
HIV-DLG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
196859323/197132452 (Hg38)
End
196859323/197132452 (Hg38)
Orient
+
Location type
Intronic
Target gene
DLG1
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-218-5p ; hsa-mir-9-3p
Nearest miRNA
hsa-let-7g/Upstream/1250057; hsa-mir-4797/Downstream/161426;
Nearest TSS
ENST00000440867/Upstream/46794; ENST00000414529/Downstream/10347;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/101949, chr3-CpG: 115/Downstream/165104
Nearest cancer related gene
DLG1(TSG, No orient, 0)
Upstream sequence
ttaacaatattaactttaatatatttttcactttttcctaatttgtacctttatagttgactattgcagtttttaatattttcacaaaaaaatgtaaagg
Downstream sequence
tcacagaataataatttcccttcactgatgattaacattgctttgcagagtctcagcagcatggtcatttttatggctccacattaccatgcaaagcaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate