Basic Information
VIS ID
TVIS30003620
Fusion event
HIV-SPON2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
1179240/1185452 (Hg38)
End
1179240/1185452 (Hg38)
Orient
-
Location type
Intronic
Target gene
SPON2
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-1303 ; hsa-mir-2110 ; hsa-mir-2278 ; hsa-mir-3135b ; hsa-mir-3150a-3p ; hsa-mir-3173-3p ; hsa-mir-3189-3p ; hsa-mir-32-3p ; hsa-mir-4428 ; hsa-mir-4450 ; hsa-mir-4462 ; hsa-mir-4468 ; hsa-mir-450a-2-3p ; hsa-mir-483-5p ; hsa-mir-5187-5p ; hsa-mir-602 ; hsa-mir-6744-5p ; hsa-mir-6761-5p ; hsa-mir-6763-5p ; hsa-mir-6810-5p ; hsa-mir-6857-5p ; hsa-mir-6891-5p
Nearest miRNA
hsa-mir-571/Upstream/835200; hsa-mir-12113/Downstream/800932;
Nearest TSS
ENST00000502981/Upstream/12241; ENST00000625256/Downstream/9682;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/12658, chr4-CpG: 84/Downstream/8945
Upstream sequence
ggcataatccaccatgcccggccagaatagtctttttgacaaatggtgttggaaaacctggacatccacatgcaaaagaatgaagttggtcaagcctgtg
Downstream sequence
atcccagcactttgggaggctgaggcgagcggatcacctgaggtcgggagttccacaccagcctggccaacatggtgaaaccccgtctctattaaaaata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate