Basic Information
VIS ID
TVIS30003621
Fusion event
HIV-MAEA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
1292820/1299032 (Hg38)
End
1292820/1299032 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAEA
miRNAs that regulate target gene
hsa-mir-455-3p
Nearest miRNA
hsa-mir-571/Upstream/948780; hsa-mir-12113/Downstream/687352;
Nearest TSS
ENST00000502981/Upstream/962; ENST00000512842/Downstream/10411;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/8489, chr4-CpG: 26/Downstream/10670
Upstream sequence
gtgcagtggcatgatcacagctcacttcagccttgacctcctgggctcaggtgatcttcctgcctcagcctcccgggtaactgggaccacgggcgcctgc
Downstream sequence
ttccgtgtctggctaatttttttatttgtagagataggttctagctccgttgtctaggctggtctccatctcttgggctcaagcattcctccctcctggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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