VISDB Viral Integration Site DataBase

VIS ID

TVIS30003625

Fusion event

HIV-HAUS3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

p16.3

Reference genome

Start

End

2237698/2235971 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-590-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6883-5p ; hsa-mir-6799-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6089 ; hsa-mir-6746-5p ; hsa-mir-8055 ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-4468 ; hsa-mir-4645-3p ; hsa-mir-922 ; hsa-mir-4666a-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-7849-3p ; hsa-mir-4300 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-566 ; hsa-mir-6503-3p ; hsa-mir-378i ; hsa-mir-422a ; hsa-mir-378h ; hsa-mir-378f ; hsa-mir-378e ; hsa-mir-378c ; hsa-mir-378d ; hsa-mir-378b ; hsa-mir-378a-3p ; hsa-mir-5697 ; hsa-mir-4438 ; hsa-mir-562 ; hsa-mir-3613-3p ; hsa-mir-1911-3p ; hsa-mir-548c-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-5694 ; hsa-mir-5586-3p ; hsa-mir-508-5p ; hsa-mir-4684-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-1227-3p ; hsa-mir-1247-3p ; hsa-mir-1273g-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-20a-3p ; hsa-mir-217 ; hsa-mir-2467-3p ; hsa-mir-34b-3p ; hsa-mir-3612 ; hsa-mir-3614-5p ; hsa-mir-377-5p ; hsa-mir-3929 ; hsa-mir-4257 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-5690 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6500-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6807-3p ; hsa-mir-6807-5p ; hsa-mir-6808-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-7977 ; hsa-mir-890 ; hsa-mir-940 ; hsa-mir-1206 ; hsa-mir-1281 ; hsa-mir-1304-3p ; hsa-mir-1343-3p ; hsa-mir-2276-3p ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-660-3p ; hsa-mir-6742-3p ; hsa-mir-6783-3p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-6852-5p ; hsa-mir-6890-3p

Nearest miRNA

hsa-mir-571/Upstream/249494; hsa-mir-12113/Downstream/14106;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/171300, chr4-CpG: 71/Downstream/5553

Upstream sequence

gtaccattaagtgtacacagaggattttaaagctataaaggcaatcctgtgtttgctaagatgagtgaaaaaaaaatacagaggcggttttatttatttt

Downstream sequence

ttaacactagtataaacattacatattcttttgtgtctgaaaaattATATACATTTTTAAATTTCTGTGCACACTCATCAAAACTATCTGAAAAACATAT