VISDB Viral Integration Site DataBase

VIS ID

TVIS30003628

Fusion event

HIV-SH3BP2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr4

Cytoband

p16.3

Reference genome

Start

End

2818289/2816562 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-939-5p ; hsa-mir-331-3p ; hsa-mir-197-3p ; hsa-mir-3613-3p ; hsa-mir-548c-3p ; hsa-mir-5693 ; hsa-mir-4668-5p ; hsa-mir-5096 ; hsa-mir-513b-5p ; hsa-mir-627-3p ; hsa-mir-186-3p ; hsa-mir-6895-5p ; hsa-mir-1972 ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-4284 ; hsa-mir-3202 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-4755-3p ; hsa-mir-3179 ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-5582-5p ; hsa-mir-1827 ; hsa-mir-203b-3p ; hsa-mir-4649-3p ; hsa-mir-665 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-708-3p ; hsa-mir-7158-3p ; hsa-mir-7160-5p ; hsa-mir-873-5p ; hsa-mir-940 ; hsa-mir-129-5p ; hsa-mir-29b-2-5p ; hsa-mir-659-3p

Nearest miRNA

hsa-mir-4800/Upstream/566406; hsa-mir-12113/Downstream/3106713;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/22822, chr4-CpG: 112/Downstream/1210

Upstream sequence

ctggtgagaatctccagtactatgctgaatagaagtagagcagacatcctttccttgttcctgttcttgggggaaaaactttcagtcttttaccactagg

Downstream sequence

tatgttagctgtgggtttttcatagaaccctttatcagattgaggaacttcccttctattcctggtttgttgactcttcttatcatggaggagtgttgaa