Basic Information
VIS ID
TVIS30003631
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
9438917/9437191 (Hg38)
End
9438917/9437191 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4A
Nearest miRNA
hsa-mir-378d-1/Upstream/1431810; hsa-mir-12113/Downstream/118977;
Nearest TSS
ENST00000502981/Upstream/74062; ENST00000334879/Downstream/7343;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/55782, chr4-CpG: 23/Downstream/37184
Nearby gene
DEFB131A(No orient, 7343)
Upstream sequence
ctgaaaagacttgaaatttgtatattgaagagatgtctgcatttccatgttcattgcagcactttttgcaatagtcaagtttcggaatcaacctaagtgt
Downstream sequence
ctatcaacagataaatggataaagaaaatatagtatatatacacagtagaatactattctaccttaaagaaaagaaacttttttatttgaagcaacaaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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