Basic Information
VIS ID
TVIS30003652
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
61678356/60812638 (Hg38)
End
61678356/60812638 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12113/Upstream/8099891; hsa-mir-1243/Downstream/109981;
Nearest TSS
ENST00000502981/Upstream/62052; ENST00000506379/Downstream/331018;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/3616689, chr4-CpG: 222/Downstream/387527
Upstream sequence
GTGAGCTAATTGTGGGACTGTTTAGGTATATTAGAAAGAATAAAATCATACAGAACGAACAGTTTTCATCTGGTAGATAAGAGCAAAAGAGAGAAGTACA
Downstream sequence
CAATGTTTTATTTGCACATCATGAAAACTAGGGGTTAGAGTTATTTTAGCTTTAAATATTTATTAGTGAAAAACGAAGAAAAAGAGAAAGAAGGGAAGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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