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TVIS30003662
Basic Information
VIS ID
TVIS30003662
Fusion event
HIV-CNOT6L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
78705448/77784294 (Hg38)
End
78705448/77784294 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNOT6L
miRNAs that regulate target gene
hsa-mir-106b-5p
;
hsa-mir-186-5p
;
hsa-mir-146a-5p
;
hsa-mir-2054
;
hsa-mir-3942-3p
;
hsa-mir-6797-3p
;
hsa-mir-6076
;
hsa-mir-545-5p
;
hsa-mir-205-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-561-3p
;
hsa-mir-4796-3p
;
hsa-mir-3609
;
hsa-mir-548ah-5p
;
hsa-mir-20b-5p
;
hsa-mir-93-5p
;
hsa-mir-20a-5p
;
hsa-mir-526b-3p
;
hsa-mir-17-5p
;
hsa-mir-106a-5p
;
hsa-mir-519d-3p
;
hsa-mir-4716-3p
;
hsa-mir-6780b-5p
;
hsa-mir-4271
;
hsa-mir-4725-3p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-8085
;
hsa-mir-6731-5p
;
hsa-mir-6797-5p
;
hsa-mir-1249-5p
;
hsa-mir-4644
;
hsa-mir-4306
;
hsa-mir-185-5p
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-5585-5p
;
hsa-mir-1252-5p
;
hsa-mir-5681a
;
hsa-mir-6783-5p
;
hsa-mir-4739
;
hsa-mir-4756-5p
;
hsa-mir-1321
;
hsa-mir-6760-5p
;
hsa-mir-6856-5p
;
hsa-mir-6758-5p
;
hsa-mir-651-3p
;
hsa-mir-5585-3p
;
hsa-mir-190a-3p
;
hsa-mir-5011-5p
;
hsa-mir-1277-5p
;
hsa-mir-8067
;
hsa-mir-6508-5p
;
hsa-mir-513c-3p
;
hsa-mir-513a-3p
;
hsa-mir-3606-3p
;
hsa-mir-4477b
;
hsa-mir-3187-3p
;
hsa-mir-155-3p
;
hsa-mir-6794-3p
;
hsa-mir-4529-5p
;
hsa-mir-3185
;
hsa-mir-4720-3p
;
hsa-mir-6837-3p
;
hsa-mir-2392
;
hsa-mir-541-5p
;
hsa-mir-1-5p
;
hsa-mir-483-3p
;
hsa-mir-646
;
hsa-mir-4668-5p
;
hsa-mir-4290
;
hsa-mir-3613-3p
;
hsa-mir-4687-5p
Nearest miRNA
hsa-mir-12113/Upstream/1208668; hsa-mir-1243/Downstream/4969043;
Nearest TSS
ENST00000502981/Upstream/41822;
ENST00000515625/Downstream/34769;
Nearest CpG islands
None/Target,
chr4-CpG: 46/Upstream/625856
,
chr4-CpG: 161/Downstream/34259
Upstream sequence
TTTAAAACTTTTTCCCATATCTGAGATACAAGACAACAGCAGCAGCAACAACATGAAACATACATAAATACTAAAATAAAAAACAGAGACCAGACCTGGG
Downstream sequence
GTTATAAATCAATCACTTCAAAATTTCAAAAATAATGCTACTATAGACATGTTTCATTTTATTTCATTATCAATATGGACAACTTAAGCTTATGATTTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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