Basic Information
VIS ID
TVIS30003665
Fusion event
HIV-CFAP299 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
End
81404308/80483154 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/3907528; hsa-mir-1243/Downstream/2270183;
Upstream sequence
ttaaattagggatagtagtttggattatacaggtgcattcaatgtaatcacaaaggttcttaaaggtggaggaggggggcagaaaaagaggccagggttg
Downstream sequence
tttgatgtgagaaggatttgacctgccattgctggctttgagggctgaagggagccacatgccacggaatgctggtgacctctagaaggtaggaaaggca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate