Basic Information
VIS ID
TVIS30003667
Fusion event
HIV-HELQ integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.23
Reference genome
GRCh37/hg19
Start
84349725/83428572 (Hg38)
End
84349725/83428572 (Hg38)
Orient
+
Location type
Intronic
Target gene
HELQ
miRNAs that regulate target gene
hsa-mir-92a-3p
Nearest miRNA
hsa-mir-12113/Upstream/675142; hsa-mir-1243/Downstream/2293896;
Nearest TSS
ENST00000502981/Upstream/846; ENST00000512375/Downstream/27232;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/93326, chr4-CpG: 45/Downstream/26941
Upstream sequence
atcatttgagcccaggagacgaaggttgcagcgagctgagattgcgccactgcattttggcctcggcagcagagcaagaccctgtcaaaaacaagcaaac
Downstream sequence
aaacaaaCCAACCAAAACAACCCCCACAACACTTTATTCACTGTCATGAAACAATCTCTAAGACATTATATTCAGGAAAAAAAGCAAGTTGCAggccaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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