Basic Information
VIS ID
TVIS30003678
Fusion event
HIV-BDH2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
104000388/103079231 (Hg38)
End
104000388/103079231 (Hg38)
Orient
+
Location type
UTR3
Target gene
BDH2
miRNAs that regulate target gene
hsa-mir-346 ; hsa-mir-375 ; hsa-mir-21-5p ; hsa-mir-766-3p
Nearest miRNA
hsa-mir-12113/Upstream/1748817; hsa-mir-1243/Downstream/6409467;
Nearest TSS
ENST00000502981/Upstream/1907; ENST00000510200/Downstream/6598;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2381, chr4-CpG: 36/Downstream/118931
Upstream sequence
tacattaggaggtggggcctttgggaggtaatcaggtcataagggtagtgccctcatgaacaggattagtgtccttataaaaagacacatgagcgctcgc
Downstream sequence
tttttttctctgctcttgctatgtgaggatacagcaagaagaggaccatctgcaaaccaggaagtgggccctaaccagaaactatatctgctggcacctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate