Basic Information
VIS ID
TVIS30003679
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
GRCh37/hg19
Start
109149547/108228391 (Hg38)
End
109149547/108228391 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/6897977; hsa-mir-1243/Downstream/1260307;
Nearest TSS
ENST00000502981/Upstream/59435; ENST00000503574/Downstream/392004;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/55001, chr4-CpG: 30/Downstream/422146
Nearby gene
LEF1-AS1(No orient, 51961)
Upstream sequence
aggcagtagctccttttttaaaaggctgaatatttcattatatatatatatatatatatactacaatttctttatccattagtccatcgacagacaGACC
Downstream sequence
TATAGAGCcctatagagcctgcagaaccatgaggcaattaaacctcttgtctttataaattacccagtctcaggtagttctttatagcagtgcaagaatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate