Basic Information
VIS ID
TVIS30003685
Fusion event
HIV-LOC107986306 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q26
Reference genome
GRCh37/hg19
Start
117822911/116901755 (Hg38)
End
117822911/116901755 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986306
Nearest miRNA
hsa-mir-12113/Upstream/2244901; hsa-mir-1305/Downstream/8605504;
Nearest TSS
ENST00000502981/Upstream/386609; ENST00000420701/Downstream/183821;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/195801, chr4-CpG: 48/Downstream/24176
Nearby gene
TRAM1L1(No orient, 181799)
Upstream sequence
gagcattgagttgtttaatcatcatcatcaacaacaacatcatcatcatcatcatcatctggagtcagacctgagtttgactcctagcccttccagtcat
Downstream sequence
caagtctgtaatgatgaagtaatatctgacactatgtgccaagctctgtgtgataagcacaccacatatgtaatctcaggtaatcagctcacaaATTCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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