Basic Information
VIS ID
TVIS30003687
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q27
Reference genome
GRCh37/hg19
Start
122176180/121255025 (Hg38)
End
122176180/121255025 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/6598171; hsa-mir-1305/Downstream/4252234;
Nearest TSS
ENST00000502981/Upstream/27559; ENST00000424958/Downstream/125622;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/182054, chr4-CpG: 67/Downstream/125387
Nearby gene
TNIP3(No orient, 27559)
Upstream sequence
ctcccacctcagcctcctgagtagctgggactacacacgcatgccaccatgcctggataatttttgtattttttgtagagacggggattcactatgtttc
Downstream sequence
ccaggctggtttcaaattcctgagatcaagtgattcacctgcctcagcctcccaaagtgttgcgattataggtatgaaccaccatgcctgacatgtgttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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