Basic Information
VIS ID
TVIS30003688
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
131061267/130140112 (Hg38)
End
131061267/130140112 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4632805; hsa-mir-1305/Downstream/13203348;
Nearest TSS
ENST00000502981/Upstream/302751; ENST00000508942/Downstream/236117;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1046368, chr4-CpG: 27/Downstream/1583080
Upstream sequence
gctacCctactcaagtagaaagtaggcatacacaatgacccaacatatcgctcttgatttataataaagagaaatacatttgcagcaagagataagtaca
Downstream sequence
agaatgtccataatagtggcatctattatagacaaaaactggaagcagtccaacactagaatgcataaataaattgggttatgttcttatgatggatggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate