Basic Information
VIS ID
TVIS30003689
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
137494914/136573759 (Hg38)
End
137494914/136573759 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/11066452; hsa-mir-1305/Downstream/6769701;
Nearest TSS
ENST00000502981/Upstream/178288; ENST00000509798/Downstream/347623;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/217427, chr4-CpG: 24/Downstream/238538
Nearby gene
LINC00613(No orient, 660079)
Upstream sequence
ttatctaattatgtgcttgtttagaaatcccaggagtcaatttccaacaacccaagcagagagatccagctgcagaattttcctacttagggaaagtaca
Downstream sequence
aacaatagcccaccaatgctgggccaaagtcaggatgacacaaaacacacctcctctgggtgattactgaagataactatcggaacaggctcacagacct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate