Basic Information
VIS ID
TVIS30003692
Fusion event
HIV-LINC01095 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.22
Reference genome
GRCh37/hg19
Start
147032716/146111564 (Hg38)
End
147032716/146111564 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01095
Nearest miRNA
hsa-mir-12113/Upstream/2768029; hsa-mir-1305/Downstream/297019;
Nearest TSS
ENST00000502981/Upstream/3407; ENST00000510331/Downstream/141;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/173634, chr4-CpG: 70/Downstream/64161
Upstream sequence
TAATTTCACCTAAACATAAAGAAGAAGCAAAACAGGAGCAGGAAAGTCAGTCTATGATAaaagctcccatttatcacaggcctcctatgagttaagtact
Downstream sequence
gtttatttgctatttctaacgcatattgcaacttacaaggcagtcctgttctccttcacaaatgaagcatccacagcacaattggtgacttcacaaaggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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