Basic Information
VIS ID
TVIS30003699
Fusion event
HIV-LOC107986324 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
160720974/159799822 (Hg38)
End
160720974/159799822 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986324
Nearest miRNA
hsa-mir-12113/Upstream/670928; hsa-mir-1305/Downstream/3293752;
Nearest TSS
ENST00000502981/Upstream/22038; ENST00000512652/Downstream/739432;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/695839, chr4-CpG: 71/Downstream/3366487
Nearby gene
RAPGEF2(No orient, 439673)
Upstream sequence
tttttatagatagaggatctcactatgatgcctggcctgatcttgaactcctggcctcaagcacacttcctgccttggcctcctaaaatgttgggattac
Downstream sequence
aggcatgagccactgtacccagtcAATTTCCATTTTTTTTTAAAAGCCATCTTCTTTCCATTACTTTCTGTTTCATGGAAAAGTGTTGAGGATTTCTACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate