Basic Information
VIS ID
TVIS30003703
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
172022258/171101107 (Hg38)
End
172022258/171101107 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/5714770; hsa-mir-1305/Downstream/85077;
Nearest TSS
ENST00000502981/Upstream/60499; ENST00000511251/Downstream/197160;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1010755, chr4-CpG: 117/Downstream/711476
Nearby gene
LINC02431(No orient, 41947)
Upstream sequence
agctcataatttttatccaacctttatttttcattttttccccttttgggaaacaggcatttagggctaggatgctcaaaagcatctgcatatgtggaga
Downstream sequence
aacttagaaagtgaccatgcctgcccacagaaagggaaaaaacccagaaaagatgtaaaaagaccttgagtttacacctcaggctgatccttaacataga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate