Basic Information
VIS ID
TVIS30003704
Fusion event
HIV-LOC105377567 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
181476070/180554917 (Hg38)
End
181476070/180554917 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377567
Nearest miRNA
hsa-mir-12113/Upstream/6131053; hsa-mir-1305/Downstream/1614376;
Nearest TSS
ENST00000502981/Upstream/1089612; ENST00000512480/Downstream/204121;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/495451, chr4-CpG: 20/Downstream/1586208
Upstream sequence
GTGTTCAGTGTGACATGGAGGGGAGATGAATTTTTAAGATGAGAGAGGAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgag
Downstream sequence
gcgggcggatcatgaggtcaggagattgagaccatcccggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgggcgtggtggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate