Basic Information
VIS ID
TVIS30003705
Fusion event
HIV-PRIMPOL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
185579128/184657974 (Hg38)
End
185579128/184657974 (Hg38)
Orient
-
Location type
Intronic
Target gene
PRIMPOL
miRNAs that regulate target gene
hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-12113/Upstream/2488596; hsa-mir-3945/Downstream/193039;
Nearest TSS
ENST00000502981/Upstream/8193; ENST00000508001/Downstream/20303;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/8148, chr4-CpG: 77/Downstream/75377
Upstream sequence
cccagctactcccaaggctgaggcaggagaatggcttgaacccggaaggcggagtttgctgtgagccgagatcgcgccattgcactccagcctgggcaac
Downstream sequence
aagagcgaaactccatctcaaaaataaataaataaataaataaataaataaataaataaataTCACTAAATCAAGCAACAGATGTGTATTGCACATTCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate