Basic Information
VIS ID
TVIS30003709
Fusion event
HIV-C5orf22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
31537985/31537878 (Hg38)
End
31537985/31537878 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
C5orf22
miRNAs that regulate target gene
hsa-mir-7-5p ; hsa-mir-93-5p ; hsa-mir-505-5p ; hsa-mir-193a-3p ; hsa-mir-433-3p ; hsa-mir-193b-3p ; hsa-mir-551b-5p ; hsa-mir-548s ; hsa-mir-3190-5p ; hsa-mir-3926 ; hsa-mir-4461 ; hsa-mir-4463 ; hsa-mir-7154-5p ; hsa-mir-580-3p ; hsa-mir-383-5p ; hsa-mir-539-5p ; hsa-mir-2115-3p ; hsa-mir-1206 ; hsa-mir-6716-5p ; hsa-mir-15b-3p ; hsa-mir-759
Nearest miRNA
hsa-mir-10397/Upstream/14381886; hsa-mir-103a-1/Downstream/398224;
Nearest TSS
ENST00000502646/Upstream/5562; ENST00000510530/Downstream/295;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/5448, chr5-CpG: 107/Downstream/101068
Upstream sequence
aaacaagagagtttattcttatattagaattcactgtacacagtccaggcctatgtggcagctctagagtttggggaaccctagttccttctaccttttt
Downstream sequence
gcaccaccgtctctagaatattgcccctgtccttatagtccagggtggcttgccacctctgtgttcatatgccagtcagcagggaacaggagaacaaagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate