Basic Information
VIS ID
TVIS30003724
Fusion event
HIV-LOC105379003 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
65687776/66391948 (Hg38)
End
65687776/66391948 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105379003
Nearest miRNA
hsa-mir-10397/Upstream/6688245; hsa-mir-103a-1/Downstream/5777519;
Nearest TSS
ENST00000502646/Upstream/93480; ENST00000478569/Downstream/119656;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/247012, chr5-CpG: 151/Downstream/204101
Upstream sequence
acacacacaccatggaatactatgcagccataagacagaatggaataatggctgttgcagcatattggatggagttggaggccattattctgaagtaact
Downstream sequence
cagaaatggaaaatcaaatattttatgtcctcacttataagtgggagctaaggtataaggatgcaaaggcatcagaattatataataaactttggggact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate