Basic Information
VIS ID
TVIS30003725
Fusion event
HIV-MAST4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
66351773/67055945 (Hg38)
End
66351773/67055945 (Hg38)
Orient
+
Location type
Intronic
Target gene
MAST4
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-324-3p
Nearest miRNA
hsa-mir-10397/Upstream/7352242; hsa-mir-103a-1/Downstream/5113522;
Nearest TSS
ENST00000502646/Upstream/51193; ENST00000485768/Downstream/86219;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/51799, chr5-CpG: 48/Downstream/107262
Upstream sequence
acacactgtgcacatagaaaagaagtgaacactactcagatttgcgtggatgaaactcaaatatattgttggacaacaaaagcgagtcacaaaagaatat
Downstream sequence
tatgtaagcctttcatataaagttaacatgctacatacaatattttgtttagggatatatatatatatatatgtacatgatatatattatatatcctata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate