VISDB Viral Integration Site DataBase

VIS ID

TVIS30003729

Fusion event

HIV-COL4A3BP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q13.3

Reference genome

Start

End

74800855/75505030 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-660-5p ; hsa-mir-5581-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-194-5p ; hsa-mir-5000-3p ; hsa-mir-4716-5p ; hsa-mir-4436a ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-4700-3p ; hsa-mir-5011-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6807-5p ; hsa-mir-7847-3p ; hsa-mir-5196-5p ; hsa-mir-6851-5p ; hsa-mir-4747-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4795-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-7851-3p ; hsa-mir-34b-3p ; hsa-mir-490-3p ; hsa-mir-1305 ; hsa-mir-4276 ; hsa-mir-6721-5p ; hsa-mir-1911-5p ; hsa-mir-5190 ; hsa-mir-3174 ; hsa-mir-629-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6748-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-5008-5p ; hsa-mir-4726-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-660-3p ; hsa-mir-1273d ; hsa-mir-548as-3p ; hsa-mir-1224-3p ; hsa-mir-1260a ; hsa-mir-1260b ; hsa-mir-1273g-3p

Nearest miRNA

hsa-mir-10397/Upstream/2626367; hsa-mir-103a-1/Downstream/7335125;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/167182, chr5-CpG: 107/Downstream/5726

Upstream sequence

tattcatgtctaatgactacgagtgcaaaaaggaacagttgtttctatatactaagttaaatgtaaactaagtaggccaggcgcggtggctcatgcctgt

Downstream sequence

aatcccagcactttgggaggctgaggtgggtggatcacttgaggtcaggagtttgagaccagcctggccaacacagtgaaaccccatttctactaaaaat