Basic Information
VIS ID
TVIS30003732
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
81632175/82336356 (Hg38)
End
81632175/82336356 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/9457693; hsa-mir-103a-1/Downstream/503799;
Nearest TSS
ENST00000502646/Upstream/26320; ENST00000502523/Downstream/46589;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/57880, chr5-CpG: 23/Downstream/740927
Nearby gene
ATP6AP1L(No orient, 17710)
Upstream sequence
CTAAGGCACTGACTCTATTGTTTCAGCATGGCTGCATTTGTTTAACATAAATGGTTTGCATTTAGACTGCCTTGCGCTTTCTTCTCCGGCCTAAAGTATT
Downstream sequence
TCTTCCAAGCTAGAATGCTTTTTCTTCTTTGGCATCCATTAAAAATCATTGGCAACATGGCCACGTTCCAGAAACACTTCTGTAATGCCAACCACAGGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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