Basic Information
VIS ID
TVIS30003733
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
82267265/82971446 (Hg38)
End
82267265/82971446 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105379051 ; ST13P12
Nearest miRNA
hsa-mir-10397/Upstream/131222; hsa-mir-103a-1/Downstream/4143433;
Nearest TSS
ENST00000502646/Upstream/30463; ENST00000509268/Downstream/41663;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/692970, chr5-CpG: 23/Downstream/105837
Nearby gene
TMEM167A(No orient, 81400)
Upstream sequence
aggaaatccagctagtcctgtctctcagtctgagacacttagtgaactttgtgttgggagatggaagctggatggccctcgggggctgacctgcagggtg
Downstream sequence
ttgaaatttgggatatagcagagagagaacttggcacaacttgttaccgcaggctgtagaatcctgtaagagagctgccatgcagcccacgcccggtcga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate