Basic Information
VIS ID
TVIS30003736
Fusion event
HIV-LOC101929710 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
95654598/96318894 (Hg38)
End
95654598/96318894 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA5B
Target gene
LOC101929710
Nearest miRNA
hsa-mir-10397/Upstream/239682; hsa-mir-103a-1/Downstream/4497588;
Nearest TSS
ENST00000502646/Upstream/71118; ENST00000509602/Downstream/94091;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/356780, chr5-CpG: 18/Downstream/114276
Upstream sequence
CTGCCAGGAATATCTAGTAGTTTGGTTTCCTCTTCTGGAAAATGACATTAGTAGTTAATGCTACagtgtttactttgtgccaggccatttcctaagtact
Downstream sequence
ttacatatatatttactcttttaagtctcatgacaaccctatgaggtagtgtgttagtacattttgcattgctataaaggaatacctaagactgggtaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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