Basic Information
VIS ID
TVIS30003740
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
107718117/108382416 (Hg38)
End
107718117/108382416 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/7565851; hsa-mir-103a-1/Downstream/2131413;
Nearest TSS
ENST00000502646/Upstream/318; ENST00000513676/Downstream/345844;
Nearest CpG islands
chr5-CpG: 220/Target, None/Upstream, None/Downstream
Nearby gene
FBXL17(No orient, 318)
Upstream sequence
CTGGGCGTGCGCCGCGTTTCTGAGGCGGGAGGAGACACTTCCGAGCCAGCTGTGTGACATCCGTTTACACAGCCGCGCTGACGTCTCGAGGTGTAAGTTC
Downstream sequence
AAGAGCTGCCATTGGCCGGGAGCCGCTGGGCTCTTCCCCTCACCTTCCACCCCTGTCACCACCCCTGACTCGGAAACCGAGGCCACTTCGAAGCCGCGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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