VISDB Viral Integration Site DataBase

VIS ID

TVIS30003746

Fusion event

HIV-DTWD2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q23.1

Reference genome

Start

End

118319462/118983767 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-92a-3p ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-5583-5p ; hsa-mir-3129-3p ; hsa-mir-548e-5p ; hsa-mir-6836-3p ; hsa-mir-498 ; hsa-mir-5001-3p ; hsa-mir-6829-3p ; hsa-mir-3191-5p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-6728-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-5571-5p ; hsa-mir-4683 ; hsa-mir-4786-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4793-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6888-5p ; hsa-mir-6502-3p ; hsa-mir-433-5p ; hsa-mir-6082 ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-298 ; hsa-mir-3664-3p ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-485-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-6511a-5p ; hsa-mir-665 ; hsa-mir-6884-5p ; hsa-mir-7160-5p

Nearest miRNA

hsa-mir-10397/Upstream/9097; hsa-mir-103a-1/Downstream/170870;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/2407079, chr5-CpG: 69/Downstream/4385

Upstream sequence

AATCTTGCAGACTTAGTGATGCCATTTCAACTGGTGATAATACCTACTGTGCAAACAAAATCTTAACGCTTCTTCAGCAAGGAGCCTGGAGTGAGATCAA

Downstream sequence

GTACTTGCATGAGCTAGGGAACCAAGTGGACTGGAGCTAGAGACCCAATTCTGCTacctgcctgttacctgtatttcctcatcatttaaaagcaaacagt