VISDB Viral Integration Site DataBase

VIS ID

TVIS30003747

Fusion event

HIV-DMXL1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q23.1

Reference genome

Start

End

118483986/119148291 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-9-5p ; hsa-mir-122-5p ; hsa-mir-92a-3p ; hsa-mir-5096 ; hsa-mir-3149 ; hsa-mir-6839-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-4775 ; hsa-mir-6832-5p ; hsa-mir-629-5p ; hsa-mir-4755-3p ; hsa-mir-1273f ; hsa-mir-4735-5p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-590-3p ; hsa-mir-8485 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-4662a-3p ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-3692-3p ; hsa-mir-223-5p ; hsa-mir-586 ; hsa-mir-1250-3p ; hsa-mir-129-5p ; hsa-mir-145-5p ; hsa-mir-153-5p ; hsa-mir-335-3p ; hsa-mir-4328 ; hsa-mir-5195-3p ; hsa-mir-5696 ; hsa-mir-579-3p ; hsa-mir-664b-3p ; hsa-mir-8055

Nearest miRNA

hsa-mir-10397/Upstream/173621; hsa-mir-103a-1/Downstream/6346;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/76544, chr5-CpG: 43/Downstream/120485

Upstream sequence

TGAAGGGCCCTGTAAAGTGACCATTCAGTACTTAAGTAAACATAGGCCATTCACATTTATATTGAAAAATGTGAAAGAGAAGGAGCCAGTGAGTGTTGAC

Downstream sequence

AAATTTAAAAAAATGCATTGATACCTTTAAAATTAGATTTATAATGTATAAAACTAGCAAAGAGCTGTGAAACAAATTCGGGATTAACTAGAATTAAATT