Basic Information
VIS ID
TVIS30003749
Fusion event
HIV-LOC107986444 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
118918200/119582505 (Hg38)
End
118918200/119582505 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986444
Nearest miRNA
hsa-mir-10397/Upstream/427789; hsa-mir-103a-1/Downstream/9515183;
Nearest TSS
ENST00000502646/Upstream/46067; ENST00000515256/Downstream/47054;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/129772, chr5-CpG: 42/Downstream/881621
Nearby gene
HSD17B4(No orient, 40170)
Upstream sequence
CTCTGTGGCCTGGTGGAGGTTGACAATGTTGACATGACCAGGTGTGACCACCTCCCTTCAATCTCCTGGAAGCCTTCCCTCAGTGTATGGTCCAGGCACC
Downstream sequence
ATTACTTAGCCTGGAGGAATGGAGACCATTGCAACTAGAAGGAATCTTGGTGTCTTGGCCAGTAAGAGGCTCTCAGACCAGCACAGCCACCTGATCTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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