Basic Information
VIS ID
TVIS30003758
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
132493975/133158283 (Hg38)
End
132493975/133158283 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5C
Nearest miRNA
hsa-mir-10397/Upstream/792684; hsa-mir-103a-1/Downstream/269313;
Nearest TSS
ENST00000502646/Upstream/43808; ENST00000509051/Downstream/2155;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/105606, chr5-CpG: 192/Downstream/452770
Nearby gene
FSTL4(No orient, 38177)
Upstream sequence
tttaatctgcatttgactgaatactagtaaggataagcatctttttataatgttttggacatttgtattctcaaaaatgatctgtttgtagcttttgccA
Downstream sequence
CTTAAAAATGAATCTTTAATCACACAAATAAATTACATCttatttatttatttatttatttatattttgagacagagtctgtctctgttgcccaggctgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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