VISDB Viral Integration Site DataBase

VIS ID

TVIS30003759

Fusion event

HIV-UBE2B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q31.1

Reference genome

Start

End

133712288/134376597 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-101-3p ; hsa-mir-302c-3p ; hsa-mir-491-3p ; hsa-mir-3942-5p ; hsa-mir-4703-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6514-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-1251-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6089 ; hsa-mir-1827 ; hsa-mir-1825 ; hsa-mir-520f-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-1228-3p ; hsa-mir-6504-3p ; hsa-mir-5000-5p ; hsa-mir-377-3p ; hsa-mir-548s ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-921 ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4524a-3p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-3174 ; hsa-mir-5089-5p ; hsa-mir-4715-3p ; hsa-mir-5095 ; hsa-mir-7151-3p ; hsa-mir-4763-5p ; hsa-mir-6778-3p ; hsa-mir-6804-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6715b-5p ; hsa-mir-4740-3p ; hsa-mir-4269 ; hsa-mir-4438

Nearest miRNA

hsa-mir-10397/Upstream/150745; hsa-mir-103a-1/Downstream/1426388;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/4396, chr5-CpG: 49/Downstream/35078

Upstream sequence

CTGGGTCTATGAAAATCCAGGGCTAAGGTGTTACTAAACTCTATCTTAAAACTCCACAAATCATCAGAATGAGTCCCTCTTTTTCTGTTGAAGTTTATCC

Downstream sequence

TTTCCATTCTTGAAAATCAAGAAAAAGCAGAATGAGAAACTTCTTTTAATCAGAAATCTTCTTGTTTTCAGACCAGAAGGGACACCTTTTGAAGATGGTA