Basic Information
VIS ID
TVIS30003765
Fusion event
HIV-ZMAT2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
140083564/140703979 (Hg38)
End
140083564/140703979 (Hg38)
Orient
-
Location type
Exonic
Target gene
ZMAT2
miRNAs that regulate target gene
hsa-mir-186-5p ; hsa-mir-7977 ; hsa-mir-143-5p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-764 ; hsa-mir-6895-5p ; hsa-mir-338-5p ; hsa-mir-3672 ; hsa-mir-3675-3p ; hsa-mir-4662a-5p ; hsa-mir-4666a-3p ; hsa-mir-4684-5p ; hsa-mir-4786-5p ; hsa-mir-548c-3p ; hsa-mir-6771-3p ; hsa-mir-6849-3p ; hsa-mir-6864-3p ; hsa-mir-769-5p
Nearest miRNA
hsa-mir-10397/Upstream/56053; hsa-mir-103a-1/Downstream/2975881;
Nearest TSS
ENST00000502646/Upstream/3515; ENST00000378133/Downstream/82157;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/12236, chr5-CpG: 20/Downstream/82394
Upstream sequence
AAACCATATTTGACTCAGGTGCTGTTTCTTCCTGTTAGATATTACTGCAATGTCTGTGACTGTGTGGTGAAGGACTCCATCAACTTTCTGGATCACATTA
Downstream sequence
ATGGAAAGAAACGTAAGGCTTGGAGGTAGCTTGTGACTAGGGCTGGAATTGGGTTTTGGAGGTGGGGTGGAATGGAAGGGTAGCTTTTTTTTTCTTCTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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