Basic Information
VIS ID
TVIS30003770
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
GRCh37/hg19
Start
148063243/148683680 (Hg38)
End
148063243/148683680 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/5003709; hsa-mir-103a-1/Downstream/378633;
Nearest TSS
ENST00000502646/Upstream/6445; ENST00000305988/Downstream/141565;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/29163, chr5-CpG: 42/Downstream/142832
Nearby gene
HTR4(No orient, 29153)
Upstream sequence
TTCTGGATTGATGCTGTTGGGAGGtgtggcccatcatgttttccaaaactagccacaccaaatatcccatgccatgtgctcttctttcaatgtgaactag
Downstream sequence
atacttctttgggatacggtgtctttttccctccccttcaatctggaaggagcatgatgacaagtgacactcatgacttcctaagctaggtcataagaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate