Basic Information
VIS ID
TVIS30003771
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
GRCh37/hg19
Start
148505614/149126051 (Hg38)
End
148505614/149126051 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/63642; hsa-mir-103a-1/Downstream/302867;
Nearest TSS
ENST00000502646/Upstream/61778; ENST00000515796/Downstream/15432;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/299132, chr5-CpG: 47/Downstream/15378
Nearby gene
ABLIM3(No orient, 15432)
Upstream sequence
gccactccagggaaagcgactgtgggtgagggaagagcaggagtggagtctattggccctgacttggcccacaatggtagcagtggtcatgagaagtatt
Downstream sequence
ctgattctggctacatccaggtagatcagcaggatttctggatggattagatagaaggttgtgagagatacagaaacatcaaggcaaattccaaatgttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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