Basic Information
VIS ID
TVIS30003776
Fusion event
HIV-CYFIP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
156721403/157294394 (Hg38)
End
156721403/157294394 (Hg38)
Orient
-
Location type
Intronic
Target gene
CYFIP2
miRNAs that regulate target gene
hsa-mir-423-3p ; hsa-mir-149-5p ; hsa-mir-9-5p ; hsa-mir-3146 ; hsa-mir-335-3p ; hsa-mir-4729 ; hsa-mir-491-3p ; hsa-mir-5003-3p ; hsa-mir-5696 ; hsa-mir-579-3p ; hsa-mir-664b-3p
Nearest miRNA
hsa-mir-10397/Upstream/2464854; hsa-mir-103a-1/Downstream/3180008;
Nearest TSS
ENST00000502646/Upstream/17335; ENST00000518511/Downstream/6424;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/27655, chr5-CpG: 50/Downstream/165567
Upstream sequence
caaggacagcttggaggttagaagcaagatggagtcaactatgtcagatttctctgtcgtaatctttgcaaaggcagtttTGATAATATACTTTCATAAC
Downstream sequence
TATTTCTGTTTTGTTTTTTAACCTATCTGCTGTACATACTGTTTTGCTACTTGCTTATTTTCTTGCTAACATTATATCTGGGGGGCACATAGCTCTGCCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate