VISDB Viral Integration Site DataBase

VIS ID

TVIS30003782

Fusion event

HIV-SFXN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.2

Reference genome

Start

End

174933294/175506291 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-28-3p ; hsa-mir-421 ; hsa-mir-92b-3p ; hsa-mir-501-5p ; hsa-mir-31-5p ; hsa-mir-22-3p ; hsa-mir-4282 ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-150-3p ; hsa-mir-30e-5p ; hsa-mir-942-3p ; hsa-mir-4495 ; hsa-mir-1245b-3p ; hsa-mir-4802-3p ; hsa-mir-5683 ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-29b-2-5p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-563 ; hsa-mir-380-5p ; hsa-mir-3670 ; hsa-mir-3976 ; hsa-mir-3171 ; hsa-mir-4999-3p ; hsa-mir-587 ; hsa-mir-128-3p ; hsa-mir-216a-3p ; hsa-mir-340-3p ; hsa-mir-3613-3p ; hsa-mir-3681-3p ; hsa-mir-4684-5p ; hsa-mir-548c-3p ; hsa-mir-6771-3p ; hsa-mir-6827-3p

Nearest miRNA

hsa-mir-10397/Upstream/754504; hsa-mir-1229/Downstream/861655;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/27229, chr5-CpG: 72/Downstream/151721

Upstream sequence

ATGCTAGAAATATCGGTGAACATTTGTATAATCTTTCTAGATAGAAACTTTATTCCTACCTGATTACATAAAAATAATAATTTTCAGGACAGCAGATAAC

Downstream sequence

ACAACCAAAAAAATAAAAATTGGGGTTAATCGCAGTGTATAAAATACGCGTACAAATTACATAAATAACAATGATGCTGCTGTGGATGGTAATTTTTTAA