Basic Information
VIS ID
TVIS30003788
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
180262850/180835850 (Hg38)
End
180262850/180835850 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5G
Nearest miRNA
hsa-mir-10397/Upstream/820453; hsa-mir-4638/Downstream/207553;
Nearest TSS
ENST00000502646/Upstream/4485; ENST00000514448/Downstream/13666;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/4066, chr5-CpG: 81/Downstream/25053
Nearby gene
LINC00847(No orient, 124)
Upstream sequence
TTATGTGACAGTTTCATTACCAAATGGATGTTCTCACCACTATTTCAAGTGCAGTATGAAACTTTATTTGAAATTCTAAAAAACTAATTAATTAATTAAG
Downstream sequence
GTTGTTTGGCTCTTGCAGCCtgtattaatttcctagggcagccgtaacaaaggagtcacataccacatgacattttggtcagcagcaggctgcgtttctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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