Basic Information
VIS ID
TVIS30003792
Fusion event
HIV-LOC101927730 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
2888571/2888337 (Hg38)
End
2888571/2888337 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101927730
Nearest miRNA
hsa-mir-4645/Upstream/34230; hsa-mir-10398/Downstream/2259896;
Nearest TSS
ENST00000381078/Upstream/6930; ENST00000437718/Downstream/14943;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/12760, chr6-CpG: 21/Downstream/3358
Upstream sequence
aatgtggaatggttcaactgctgtggaaaacagtttgtctgttcctcaaaaagctaaacatagaattaacatatgacccagcagttccactcctagatat
Downstream sequence
atacccaagagaatgcaaaataggcattcaaacaaatacaggtacacaaacattcatagcagcactattcccaatagccaaaagtcagaaacaacccaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate